Variant report

Variant	rs7983571
Chromosome Location	chr13:94685915-94685916
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12864578	0.96[ASN][1000 genomes]
rs12869596	0.87[ASN][1000 genomes]
rs12876666	0.83[ASN][1000 genomes]
rs1360048	0.86[ASN][1000 genomes]
rs2225230	0.90[ASN][1000 genomes]
rs7988278	0.96[ASN][1000 genomes]
rs943916	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516336	0.86[ASN][1000 genomes]
rs9556345	0.83[ASN][1000 genomes]
rs9561481	0.81[ASN][1000 genomes]
rs9561488	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1052141	chr13:94596760-94689892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv900923	chr13:94641894-94692925	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94678600-94686400	Weak transcription	Fetal Stomach	stomach
2	chr13:94683400-94686000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:94683600-94686200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr13:94683600-94686600	Enhancers	Fetal Intestine Large	intestine
5	chr13:94684000-94686200	Weak transcription	Ovary	ovary
6	chr13:94684400-94687000	Enhancers	Fetal Heart	heart
7	chr13:94684600-94686800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr13:94685000-94686000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr13:94685400-94687000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr13:94685400-94689200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr13:94685600-94686000	Enhancers	Brain Germinal Matrix	brain
12	chr13:94685600-94687000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr13:94685800-94686000	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr13:94685800-94686200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr13:94685800-94686200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr13:94685800-94686600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr13:94685800-94686800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr13:94685800-94687000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr13:94685800-94688400	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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