Variant report

Variant	rs7988460
Chromosome Location	chr13:37782222-37782223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10219784	1.00[ASN][1000 genomes]
rs17054829	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17054838	1.00[CHB][hapmap]
rs1980732	1.00[ASN][1000 genomes]
rs1980733	1.00[ASN][1000 genomes]
rs4566028	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73177085	1.00[ASN][1000 genomes]
rs7322413	1.00[ASN][1000 genomes]
rs7336653	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7982476	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986414	1.00[ASN][1000 genomes]
rs7991565	1.00[ASN][1000 genomes]
rs9315475	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9532013	1.00[ASN][1000 genomes]
rs9603150	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37773200-37783600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:37777400-37783200	Weak transcription	NHDF-Ad	bronchial
3	chr13:37781800-37782600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr13:37781800-37782600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr13:37782000-37784600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:37782200-37782400	Flanking Active TSS	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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