Variant report

Variant	rs798915
Chromosome Location	chr7:120907573-120907574
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10225539	1.00[CEU][hapmap]
rs10229198	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10230185	1.00[CEU][hapmap]
rs10230310	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10232353	1.00[CEU][hapmap]
rs10244109	1.00[CEU][hapmap]
rs10252157	1.00[CEU][hapmap]
rs10259598	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10260002	1.00[CEU][hapmap]
rs10260631	1.00[CEU][hapmap]
rs10274324	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10279122	0.87[EUR][1000 genomes]
rs13438127	0.87[EUR][1000 genomes]
rs2691032	1.00[CEU][hapmap];0.85[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35793694	0.86[EUR][1000 genomes]
rs57977421	0.98[EUR][1000 genomes]
rs6951173	1.00[CEU][hapmap]
rs6965592	1.00[CEU][hapmap]
rs7808138	1.00[CEU][hapmap]
rs798908	0.91[EUR][1000 genomes]
rs798909	0.91[EUR][1000 genomes]
rs798913	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs798917	1.00[CEU][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs798918	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025430	chr7:120638930-121179289	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1030792	chr7:120662815-120917533	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1019025	chr7:120667937-120918696	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv539100	chr7:120667937-120918696	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv427802	chr7:120749159-120935856	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1034353	chr7:120818382-121040576	Enhancers Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv1026322	chr7:120841937-121188037	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv539102	chr7:120841937-121188037	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	esv2755350	chr7:120848049-121119049	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv1027619	chr7:120906437-120976630	Enhancers Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120872600-120936600	Weak transcription	Psoas Muscle	Psoas
2	chr7:120886600-120910600	Weak transcription	Fetal Kidney	kidney
3	chr7:120888400-120910000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:120888600-120907800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr7:120888600-120907800	Weak transcription	Right Ventricle	heart
6	chr7:120888600-120908000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:120888600-120908200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:120888800-120937800	Weak transcription	Colon Smooth Muscle	Colon
9	chr7:120889600-120913600	Weak transcription	NHDF-Ad	bronchial
10	chr7:120893400-120916600	Strong transcription	K562	blood
11	chr7:120893400-120916800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:120895800-120923800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr7:120897600-120917200	Weak transcription	Primary B cells from peripheral blood	blood
14	chr7:120899400-120907800	Weak transcription	Fetal Stomach	stomach
15	chr7:120900000-120918200	Weak transcription	Osteobl	bone
16	chr7:120902400-120908600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:120903000-120918000	Strong transcription	HSMM	muscle
18	chr7:120904600-120908600	Weak transcription	Fetal Lung	lung
19	chr7:120904600-120918200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr7:120904800-120911600	Weak transcription	Spleen	Spleen
21	chr7:120905600-120909000	Strong transcription	Left Ventricle	heart
22	chr7:120905600-120909200	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr7:120905600-120910000	Strong transcription	Stomach Smooth Muscle	stomach
24	chr7:120905600-120910200	Strong transcription	Ovary	ovary
25	chr7:120905600-120910200	Strong transcription	Skeletal Muscle Male	skeletal muscle
26	chr7:120906000-120908800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr7:120906000-120912600	Strong transcription	Liver	Liver
28	chr7:120906200-120909600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr7:120906400-120908800	Strong transcription	HSMMtube	muscle
30	chr7:120906400-120909000	Strong transcription	Adipose Nuclei	Adipose
31	chr7:120906400-120909600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr7:120906800-120907600	Weak transcription	Aorta	Aorta
33	chr7:120906800-120907800	Weak transcription	NHLF	lung
34	chr7:120907400-120907600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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