Variant report

Variant	rs799588
Chromosome Location	chr7:96902638-96902639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2394620	0.80[EUR][1000 genomes]
rs799589	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs799590	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs799592	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs799588	ACN9	cis	parietal	SCAN
rs799588	DLX6	cis	cerebellum	SCAN
rs799588	BHLHA15	cis	cerebellum	SCAN
rs799588	GPC2	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96902000-96903000	Enhancers	Sigmoid Colon	Sigmoid Colon
2	chr7:96902400-96903000	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr7:96902600-96905600	Weak transcription	Rectal Mucosa Donor 29	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links