Variant report

Variant	rs7996800
Chromosome Location	chr13:62588798-62588799
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10161939	0.82[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs17060737	0.88[CHB][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs4497562	0.83[EUR][1000 genomes]
rs4600366	0.92[EUR][1000 genomes]
rs4612940	0.83[EUR][1000 genomes]
rs67126392	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7328828	0.87[EUR][1000 genomes]
rs7333689	0.88[EUR][1000 genomes]
rs7984778	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7991363	0.92[EUR][1000 genomes]
rs9317211	0.84[ASN][1000 genomes]
rs9317212	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9539378	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9539382	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9539390	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9539391	0.83[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs9598415	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1038867	chr13:62302878-62594554	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv900251	chr13:62502166-62624458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv900252	chr13:62502166-62687843	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv900253	chr13:62515266-62660299	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv900254	chr13:62549703-62660299	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv900255	chr13:62549703-62680229	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv900256	chr13:62569634-62660299	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62588600-62588800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr13:62588600-62589000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:62588600-62589000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:62588600-62589000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr13:62588600-62589000	Active TSS	Adipose Nuclei	Adipose
6	chr13:62588600-62589000	Active TSS	Brain Angular Gyrus	brain
7	chr13:62588600-62589000	Active TSS	Brain Anterior Caudate	brain
8	chr13:62588600-62589000	Active TSS	Brain Cingulate Gyrus	brain
9	chr13:62588600-62589000	Active TSS	Brain Hippocampus Middle	brain
10	chr13:62588600-62589000	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr13:62588600-62589000	Active TSS	Brain Substantia Nigra	brain
12	chr13:62588600-62589000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr13:62588600-62589000	Active TSS	Fetal Lung	lung
14	chr13:62588600-62589000	Active TSS	Fetal Muscle Leg	muscle
15	chr13:62588600-62589000	Active TSS	Fetal Stomach	stomach
16	chr13:62588600-62589000	Active TSS	Psoas Muscle	Psoas
17	chr13:62588600-62589000	Active TSS	A549	lung
18	chr13:62588600-62589000	Active TSS	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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