Variant report

Variant	rs800102
Chromosome Location	chr3:144399713-144399714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1088971	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1088972	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1091713	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1092103	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1151557	0.82[EUR][1000 genomes]
rs1151563	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1178937	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1178938	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1178939	0.91[EUR][1000 genomes]
rs1178940	0.91[EUR][1000 genomes]
rs800041	0.90[EUR][1000 genomes]
rs800043	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs800045	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs800047	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs800050	0.82[EUR][1000 genomes]
rs800051	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs800054	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs800055	0.82[EUR][1000 genomes]
rs800057	0.82[EUR][1000 genomes]
rs800058	0.80[AMR][1000 genomes]
rs800059	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs800060	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs800061	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs800062	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs800063	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs800064	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs800065	0.92[EUR][1000 genomes]
rs800094	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800096	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800097	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800100	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs800103	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3379740	chr3:144225847-144433818	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144396600-144401000	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links