Variant report
| Variant | rs800065 |
|---|---|
| Chromosome Location | chr3:144388175-144388176 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1088971 | 0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1088972 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1091544 | 0.82[EUR][1000 genomes] |
| rs1151563 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1178937 | 0.91[EUR][1000 genomes] |
| rs1178938 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1178939 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1178940 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs800041 | 0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs800043 | 0.90[EUR][1000 genomes] |
| rs800049 | 0.82[EUR][1000 genomes] |
| rs800053 | 0.81[EUR][1000 genomes] |
| rs800054 | 0.85[CEU][hapmap] |
| rs800058 | 0.82[EUR][1000 genomes] |
| rs800060 | 0.83[EUR][1000 genomes] |
| rs800061 | 0.83[EUR][1000 genomes] |
| rs800062 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs800063 | 0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs800064 | 0.84[EUR][1000 genomes] |
| rs800070 | 0.89[ASN][1000 genomes] |
| rs800073 | 0.89[ASN][1000 genomes] |
| rs800074 | 0.89[ASN][1000 genomes] |
| rs800077 | 0.89[ASN][1000 genomes] |
| rs800094 | 0.93[EUR][1000 genomes] |
| rs800096 | 0.93[EUR][1000 genomes] |
| rs800097 | 0.93[EUR][1000 genomes] |
| rs800099 | 0.95[ASN][1000 genomes] |
| rs800100 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs800102 | 0.92[EUR][1000 genomes] |
| rs800103 | 0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532633 | chr3:143802417-144440646 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv591928 | chr3:144050897-144822081 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv3379740 | chr3:144225847-144433818 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv2757895 | chr3:144236202-144391387 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv2759185 | chr3:144236202-144391387 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:144387600-144388600 | Enhancers | Liver | Liver |
| 2 | chr3:144388000-144388600 | Enhancers | HepG2 | liver |
