Variant report
| Variant | rs8001555 |
|---|---|
| Chromosome Location | chr13:93081132-93081133 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11070025 | 0.80[CEU][hapmap];0.87[MEX][hapmap];0.83[AMR][1000 genomes] |
| rs12859741 | 0.86[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap] |
| rs16947594 | 0.86[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap];0.86[MKK][hapmap] |
| rs16952637 | 0.93[ASN][1000 genomes] |
| rs2149064 | 0.86[CHB][hapmap];0.81[JPT][hapmap] |
| rs2149065 | 0.86[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap] |
| rs2209837 | 0.86[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap];0.86[MKK][hapmap] |
| rs2209838 | 0.90[CEU][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap];0.94[EUR][1000 genomes] |
| rs2374012 | 0.88[GIH][hapmap] |
| rs4545664 | 0.82[CHB][hapmap];0.85[JPT][hapmap] |
| rs720801 | 0.86[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap] |
| rs7320220 | 0.86[CHB][hapmap];0.81[JPT][hapmap] |
| rs7320711 | 0.86[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap] |
| rs7989492 | 0.86[CHB][hapmap];0.81[JPT][hapmap] |
| rs7990928 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7991465 | 0.92[ASN][1000 genomes] |
| rs7991869 | 0.86[CHB][hapmap];0.81[JPT][hapmap] |
| rs7994262 | 0.86[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap];0.86[MKK][hapmap] |
| rs7994769 | 0.90[CEU][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap] |
| rs9301806 | 0.90[CEU][hapmap] |
| rs9561043 | 0.90[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832680 | chr13:93021114-93181489 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
