Variant report

Variant	rs8002605
Chromosome Location	chr13:97842018-97842019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58559014	1.00[AFR][1000 genomes]
rs60659040	0.90[AFR][1000 genomes]
rs7982759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1137	chr13:97803474-97848814	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97830200-97843400	Weak transcription	Spleen	Spleen
2	chr13:97838600-97844000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:97838800-97843600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:97839600-97844800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:97840800-97843400	Weak transcription	Thymus	Thymus
6	chr13:97840800-97843600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr13:97840800-97843600	Weak transcription	HSMMtube	muscle
8	chr13:97841000-97845200	Weak transcription	HMEC	breast
9	chr13:97841000-97846400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr13:97841200-97842200	Weak transcription	Fetal Thymus	thymus
11	chr13:97841200-97842200	Weak transcription	Ovary	ovary
12	chr13:97841200-97843400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr13:97841200-97843400	Weak transcription	Placenta	Placenta
14	chr13:97841200-97843800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr13:97841200-97845200	Weak transcription	Gastric	stomach
16	chr13:97841400-97845800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr13:97841400-97846000	Weak transcription	NHEK	skin
18	chr13:97841600-97844000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr13:97841800-97844800	Enhancers	Brain Germinal Matrix	brain
20	chr13:97842000-97842200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr13:97842000-97842200	Enhancers	Lung	lung
22	chr13:97842000-97842800	Enhancers	Fetal Muscle Trunk	muscle
23	chr13:97842000-97844800	Enhancers	Brain Cingulate Gyrus	brain
24	chr13:97842000-97846400	Enhancers	K562	blood

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