Variant report

Variant	rs60659040
Chromosome Location	chr13:97779447-97779448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97773812..97776578-chr13:97779026..97783361,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58559014	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59293967	1.00[AMR][1000 genomes]
rs59701283	1.00[AMR][1000 genomes]
rs60087275	1.00[AMR][1000 genomes]
rs7982759	0.90[AFR][1000 genomes]
rs8002605	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053686	chr13:97771607-97802296	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97771400-97779600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:97773400-97779600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:97774000-97784400	Enhancers	Placenta	Placenta
4	chr13:97776000-97781200	Enhancers	Placenta Amnion	Placenta Amnion
5	chr13:97776800-97780800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr13:97777000-97780400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:97777200-97783400	Weak transcription	K562	blood
8	chr13:97777400-97780200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr13:97778000-97780000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr13:97778200-97779800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr13:97778200-97779800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr13:97778200-97780000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr13:97778200-97780000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr13:97778200-97780200	Enhancers	HMEC	breast
15	chr13:97778600-97779600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr13:97778600-97780000	Weak transcription	Gastric	stomach
17	chr13:97778600-97784000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr13:97778800-97780000	Weak transcription	Small Intestine	intestine
19	chr13:97778800-97780200	Weak transcription	Fetal Intestine Large	intestine
20	chr13:97778800-97780200	Weak transcription	Right Atrium	heart
21	chr13:97778800-97780600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr13:97778800-97783600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr13:97778800-97783800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr13:97778800-97783800	Weak transcription	Brain Substantia Nigra	brain
25	chr13:97778800-97788200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr13:97779000-97786200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr13:97779000-97788400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr13:97779200-97780200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr13:97779200-97780600	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr13:97779200-97781800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr13:97779200-97782200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr13:97779200-97782200	Weak transcription	NHLF	lung
33	chr13:97779200-97782400	Weak transcription	NHDF-Ad	bronchial
34	chr13:97779200-97785600	Weak transcription	Lung	lung
35	chr13:97779400-97780200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr13:97779400-97780400	Enhancers	GM12878-XiMat	blood

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