Variant report

Variant	rs59293967
Chromosome Location	chr13:97921242-97921243
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97918195..97920707-chr13:97920859..97922719,2	K562	blood:
2	chr13:97915607..97918159-chr13:97919580..97921981,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12100326	1.00[AMR][1000 genomes]
rs13329004	1.00[AMR][1000 genomes]
rs13329005	1.00[AMR][1000 genomes]
rs41315034	1.00[AMR][1000 genomes]
rs56209531	1.00[AMR][1000 genomes]
rs57105558	1.00[AMR][1000 genomes]
rs57871459	1.00[AMR][1000 genomes]
rs58559014	1.00[AMR][1000 genomes]
rs59701283	1.00[AMR][1000 genomes]
rs59907655	1.00[AMR][1000 genomes]
rs60087275	1.00[AMR][1000 genomes]
rs60336604	1.00[AMR][1000 genomes]
rs60616579	1.00[AMR][1000 genomes]
rs60659040	1.00[AMR][1000 genomes]
rs61473452	1.00[AMR][1000 genomes]
rs6491351	1.00[AMR][1000 genomes]
rs74105473	1.00[AMR][1000 genomes]
rs9943962	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97910600-97927600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr13:97910600-97935000	Weak transcription	Colonic Mucosa	Colon
3	chr13:97912800-97925200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr13:97913200-97924800	Weak transcription	Stomach Mucosa	stomach
5	chr13:97913600-97925200	Weak transcription	HSMMtube	muscle
6	chr13:97913600-97926600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr13:97913800-97926600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr13:97914200-97925200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr13:97914200-97925400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:97914200-97927600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr13:97914200-97927800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr13:97914200-97960200	Weak transcription	Fetal Brain Male	brain
13	chr13:97914400-97921400	Weak transcription	HSMM	muscle
14	chr13:97914400-97927400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr13:97914400-97928000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr13:97914400-97929000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr13:97914600-97925800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr13:97914600-97925800	Weak transcription	GM12878-XiMat	blood
19	chr13:97914600-97927200	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr13:97914600-97927200	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr13:97914800-97923000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr13:97914800-97925400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr13:97915400-97927800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr13:97915600-97921400	Enhancers	HUVEC	blood vessel
25	chr13:97916400-97923200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr13:97916600-97922200	Enhancers	Brain Angular Gyrus	brain
27	chr13:97916600-97923400	Enhancers	Brain Substantia Nigra	brain
28	chr13:97916800-97922000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr13:97917000-97922200	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr13:97917200-97921600	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr13:97917200-97925200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr13:97917800-97921600	Strong transcription	Primary B cells from peripheral blood	blood
33	chr13:97917800-97924800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr13:97917800-97925600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr13:97918000-97922000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr13:97918000-97922000	Enhancers	Rectal Smooth Muscle	rectum
37	chr13:97918200-97921600	Enhancers	Left Ventricle	heart
38	chr13:97918200-97922400	Enhancers	Right Atrium	heart
39	chr13:97918200-97924000	Enhancers	Right Ventricle	heart
40	chr13:97918400-97922400	Enhancers	H1 Cell Line	embryonic stem cell
41	chr13:97918600-97921800	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr13:97918600-97921800	Enhancers	Ovary	ovary
43	chr13:97918600-97922000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr13:97918600-97922200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr13:97918600-97922200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr13:97918600-97922200	Enhancers	A549	lung
47	chr13:97918600-97922200	Enhancers	HMEC	breast
48	chr13:97918600-97922400	Genic enhancers	HepG2	liver
49	chr13:97918800-97921600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
50	chr13:97919000-97935000	Weak transcription	Gastric	stomach

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