Variant report

Variant	rs6491351
Chromosome Location	chr13:98056858-98056859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12100131	1.00[AMR][1000 genomes]
rs12100173	1.00[AMR][1000 genomes]
rs12100326	1.00[AMR][1000 genomes]
rs13329004	1.00[AMR][1000 genomes]
rs13329005	1.00[AMR][1000 genomes]
rs41315034	1.00[AMR][1000 genomes]
rs56209531	1.00[AMR][1000 genomes]
rs56774219	1.00[AMR][1000 genomes]
rs57105558	1.00[AMR][1000 genomes]
rs57256896	1.00[AMR][1000 genomes]
rs57871459	1.00[AMR][1000 genomes]
rs58549508	1.00[AMR][1000 genomes]
rs59293967	1.00[AMR][1000 genomes]
rs59907655	1.00[AMR][1000 genomes]
rs60087275	1.00[AMR][1000 genomes]
rs60336604	1.00[AMR][1000 genomes]
rs60474634	1.00[AMR][1000 genomes]
rs60616579	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61473452	1.00[AMR][1000 genomes]
rs74105473	1.00[AMR][1000 genomes]
rs9943962	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1038798	chr13:98008467-98068130	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98044600-98059400	Weak transcription	Left Ventricle	heart
2	chr13:98045400-98059400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr13:98053400-98057000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:98056000-98057200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:98056200-98057200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr13:98056200-98057200	Enhancers	Fetal Lung	lung
7	chr13:98056200-98057200	Enhancers	NHDF-Ad	bronchial
8	chr13:98056400-98057000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr13:98056400-98057000	Enhancers	Osteobl	bone
10	chr13:98056400-98057200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr13:98056400-98057200	Enhancers	Fetal Muscle Leg	muscle
12	chr13:98056600-98057000	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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