Variant report

Variant	rs41315034
Chromosome Location	chr13:98045485-98045486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12100131	1.00[AMR][1000 genomes]
rs12100173	1.00[AMR][1000 genomes]
rs12100326	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13329004	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13329005	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56209531	1.00[AMR][1000 genomes]
rs56774219	1.00[AMR][1000 genomes]
rs57105558	1.00[AMR][1000 genomes]
rs57256896	1.00[AMR][1000 genomes]
rs57871459	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58549508	1.00[AMR][1000 genomes]
rs59293967	1.00[AMR][1000 genomes]
rs59907655	1.00[AMR][1000 genomes]
rs60087275	1.00[AMR][1000 genomes]
rs60336604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60474634	1.00[AMR][1000 genomes]
rs60616579	1.00[AMR][1000 genomes]
rs61473452	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6491351	1.00[AMR][1000 genomes]
rs74105473	1.00[AMR][1000 genomes]
rs9943962	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1038798	chr13:98008467-98068130	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97995400-98050200	Weak transcription	Small Intestine	intestine
2	chr13:98020000-98045600	Weak transcription	Hela-S3	cervix
3	chr13:98020200-98046000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:98020400-98048000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:98022000-98045600	Weak transcription	Colonic Mucosa	Colon
6	chr13:98022000-98048000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr13:98027800-98048000	Weak transcription	K562	blood
8	chr13:98028000-98056400	Weak transcription	Psoas Muscle	Psoas
9	chr13:98028200-98046200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr13:98028200-98048000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr13:98028200-98048000	Weak transcription	Fetal Kidney	kidney
12	chr13:98028400-98047600	Weak transcription	HMEC	breast
13	chr13:98028600-98046800	Weak transcription	A549	lung
14	chr13:98029400-98046800	Weak transcription	NHLF	lung
15	chr13:98037600-98048000	Weak transcription	Aorta	Aorta
16	chr13:98038600-98049400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr13:98039200-98045800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr13:98039600-98054400	Weak transcription	Primary T cells from cord blood	blood
19	chr13:98040000-98046800	Weak transcription	Right Ventricle	heart
20	chr13:98040000-98048200	Weak transcription	Right Atrium	heart
21	chr13:98040000-98049800	Weak transcription	Lung	lung
22	chr13:98040200-98049000	Weak transcription	Brain Angular Gyrus	brain
23	chr13:98040200-98049400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr13:98040400-98047800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr13:98041000-98046200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr13:98041000-98046800	Weak transcription	Ovary	ovary
27	chr13:98041000-98046800	Weak transcription	Pancreas	Pancrea
28	chr13:98041000-98048200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr13:98041400-98046200	Weak transcription	Brain Hippocampus Middle	brain
30	chr13:98041400-98046800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr13:98041400-98049000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr13:98041400-98049200	Weak transcription	Colon Smooth Muscle	Colon
33	chr13:98041400-98050200	Weak transcription	Fetal Stomach	stomach
34	chr13:98041800-98050800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr13:98042000-98049000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr13:98042000-98052800	Weak transcription	Fetal Muscle Leg	muscle
37	chr13:98043200-98046400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr13:98043600-98045600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr13:98043600-98046200	Strong transcription	Placenta	Placenta
40	chr13:98043600-98046600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr13:98043600-98047000	Strong transcription	Liver	Liver
42	chr13:98043600-98047800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr13:98043800-98048000	Weak transcription	Brain Anterior Caudate	brain
44	chr13:98044000-98046600	Strong transcription	Primary hematopoietic stem cells	blood
45	chr13:98044000-98048800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr13:98044200-98045600	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr13:98044200-98046200	Weak transcription	Fetal Thymus	thymus
48	chr13:98044200-98047000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr13:98044200-98047000	Weak transcription	NHDF-Ad	bronchial
50	chr13:98044200-98047200	Weak transcription	Muscle Satellite Cultured Cells	--

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