Variant report

Variant	rs60474634
Chromosome Location	chr13:98187923-98187924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12100131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12100173	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12100326	1.00[AMR][1000 genomes]
rs13329004	1.00[AMR][1000 genomes]
rs13329005	1.00[AMR][1000 genomes]
rs41315034	1.00[AMR][1000 genomes]
rs56209531	1.00[AMR][1000 genomes]
rs56774219	1.00[AMR][1000 genomes]
rs57105558	1.00[AMR][1000 genomes]
rs57256896	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57871459	1.00[AMR][1000 genomes]
rs58549508	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59907655	1.00[AMR][1000 genomes]
rs60087275	1.00[AMR][1000 genomes]
rs60336604	1.00[AMR][1000 genomes]
rs60616579	1.00[AMR][1000 genomes]
rs61473452	1.00[AMR][1000 genomes]
rs6491351	1.00[AMR][1000 genomes]
rs74105473	1.00[AMR][1000 genomes]
rs9943962	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98186000-98190400	Weak transcription	Lung	lung
2	chr13:98187400-98188400	Enhancers	NHDF-Ad	bronchial
3	chr13:98187400-98188600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:98187600-98188400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:98187600-98188600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr13:98187600-98188600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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