Variant report

Variant	rs57256896
Chromosome Location	chr13:98195975-98195976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12100131	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12100173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12100326	1.00[AMR][1000 genomes]
rs13329004	1.00[AMR][1000 genomes]
rs13329005	1.00[AMR][1000 genomes]
rs41315034	1.00[AMR][1000 genomes]
rs56209531	1.00[AMR][1000 genomes]
rs56774219	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57105558	1.00[AMR][1000 genomes]
rs57871459	1.00[AMR][1000 genomes]
rs58549508	1.00[AMR][1000 genomes]
rs59907655	1.00[AMR][1000 genomes]
rs60087275	1.00[AMR][1000 genomes]
rs60336604	1.00[AMR][1000 genomes]
rs60474634	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60616579	1.00[AMR][1000 genomes]
rs61473452	1.00[AMR][1000 genomes]
rs6491351	1.00[AMR][1000 genomes]
rs74105473	1.00[AMR][1000 genomes]
rs9943962	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98192400-98196000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr13:98192400-98196600	Enhancers	Fetal Stomach	stomach
3	chr13:98193400-98197600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr13:98194400-98197000	Enhancers	NHLF	lung
5	chr13:98195400-98196400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:98195800-98196800	Enhancers	NHDF-Ad	bronchial
7	chr13:98195800-98197000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:98195800-98197200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr13:98195800-98201000	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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