Variant report

Variant	rs59701283
Chromosome Location	chr13:97778967-97778968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58559014	1.00[AMR][1000 genomes]
rs59293967	1.00[AMR][1000 genomes]
rs60087275	1.00[AMR][1000 genomes]
rs60659040	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053686	chr13:97771607-97802296	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97771400-97779600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:97772800-97779000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr13:97773400-97779000	Enhancers	HSMMtube	muscle
4	chr13:97773400-97779600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:97773600-97779200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr13:97774000-97784400	Enhancers	Placenta	Placenta
7	chr13:97775600-97779200	Enhancers	Lung	lung
8	chr13:97775800-97779200	Enhancers	Brain Angular Gyrus	brain
9	chr13:97776000-97781200	Enhancers	Placenta Amnion	Placenta Amnion
10	chr13:97776600-97779000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr13:97776600-97779000	Enhancers	Fetal Stomach	stomach
12	chr13:97776600-97779400	Enhancers	Colon Smooth Muscle	Colon
13	chr13:97776800-97779000	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr13:97776800-97780800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr13:97777000-97779200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr13:97777000-97780400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr13:97777200-97783400	Weak transcription	K562	blood
18	chr13:97777400-97780200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr13:97777600-97779000	Enhancers	Stomach Mucosa	stomach
20	chr13:97777600-97779400	Flanking Active TSS	GM12878-XiMat	blood
21	chr13:97777800-97779400	Enhancers	Ovary	ovary
22	chr13:97778000-97779000	Enhancers	Brain Cingulate Gyrus	brain
23	chr13:97778000-97780000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr13:97778200-97779800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr13:97778200-97779800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr13:97778200-97780000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr13:97778200-97780000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr13:97778200-97780200	Enhancers	HMEC	breast
29	chr13:97778400-97779000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr13:97778400-97779200	Enhancers	NHDF-Ad	bronchial
31	chr13:97778600-97779000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr13:97778600-97779000	Enhancers	Brain Anterior Caudate	brain
33	chr13:97778600-97779000	Flanking Active TSS	Fetal Lung	lung
34	chr13:97778600-97779200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr13:97778600-97779200	Enhancers	NHEK	skin
36	chr13:97778600-97779400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr13:97778600-97779400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr13:97778600-97779600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr13:97778600-97780000	Weak transcription	Gastric	stomach
40	chr13:97778600-97784000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr13:97778800-97779000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr13:97778800-97779200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr13:97778800-97779200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr13:97778800-97779200	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr13:97778800-97779200	Enhancers	NHLF	lung
46	chr13:97778800-97779400	Enhancers	Hela-S3	cervix
47	chr13:97778800-97780000	Weak transcription	Small Intestine	intestine
48	chr13:97778800-97780200	Weak transcription	Fetal Intestine Large	intestine
49	chr13:97778800-97780200	Weak transcription	Right Atrium	heart
50	chr13:97778800-97780600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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