Variant report

Variant	rs8002881
Chromosome Location	chr13:39476433-39476434
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10220034	1.00[AMR][1000 genomes]
rs10220040	1.00[AMR][1000 genomes]
rs7327183	1.00[AMR][1000 genomes]
rs7982933	1.00[AMR][1000 genomes]
rs9594310	1.00[AMR][1000 genomes]
rs9603468	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39476200-39477400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:39476200-39477400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr13:39476200-39477600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr13:39476200-39477600	Enhancers	HMEC	breast
5	chr13:39476400-39476600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:39476400-39476800	Enhancers	Pancreas	Pancrea
7	chr13:39476400-39476800	Active TSS	Spleen	Spleen
8	chr13:39476400-39477200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr13:39476400-39477600	Enhancers	Esophagus	oesophagus
10	chr13:39476400-39477600	Enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links