Variant report

Variant	rs7982933
Chromosome Location	chr13:39413536-39413537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10220034	1.00[AMR][1000 genomes]
rs10220040	1.00[AMR][1000 genomes]
rs3884530	1.00[EUR][1000 genomes]
rs7325406	1.00[EUR][1000 genomes]
rs7327183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7328965	1.00[EUR][1000 genomes]
rs7335056	1.00[EUR][1000 genomes]
rs7982333	1.00[EUR][1000 genomes]
rs7983560	1.00[EUR][1000 genomes]
rs7983965	1.00[EUR][1000 genomes]
rs8002881	1.00[AMR][1000 genomes]
rs9594296	1.00[EUR][1000 genomes]
rs9594310	1.00[AMR][1000 genomes]
rs9603431	1.00[EUR][1000 genomes]
rs9603432	1.00[EUR][1000 genomes]
rs9603434	1.00[EUR][1000 genomes]
rs9603468	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39389400-39423000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr13:39394600-39423000	Weak transcription	Fetal Kidney	kidney
3	chr13:39413400-39414000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr13:39413400-39414600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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