Variant report

Variant	rs7983560
Chromosome Location	chr13:39392929-39392930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs3884530	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7325406	1.00[EUR][1000 genomes]
rs7327183	1.00[EUR][1000 genomes]
rs7328965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335056	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7982333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7982933	1.00[EUR][1000 genomes]
rs7983965	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9594296	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9603431	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9603432	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9603434	1.00[EUR][1000 genomes]
rs9805487	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39389000-39397400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:39389200-39393200	Weak transcription	Pancreas	Pancrea
3	chr13:39389200-39404800	Weak transcription	Gastric	stomach
4	chr13:39389400-39395800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr13:39389400-39423000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr13:39390000-39393000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr13:39390000-39393000	Weak transcription	HMEC	breast
8	chr13:39390000-39393000	Weak transcription	NHEK	skin
9	chr13:39390000-39395800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr13:39390200-39393200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr13:39392400-39393400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr13:39392600-39395800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr13:39392600-39397200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr13:39392800-39394000	Enhancers	Brain Cingulate Gyrus	brain
15	chr13:39392800-39394600	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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