Variant report

Variant	rs9603434
Chromosome Location	chr13:39380707-39380708
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs3884530	1.00[EUR][1000 genomes]
rs7325406	1.00[EUR][1000 genomes]
rs7327183	1.00[EUR][1000 genomes]
rs7328965	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7335056	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7982164	0.80[AFR][1000 genomes]
rs7982333	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7982933	1.00[EUR][1000 genomes]
rs7983560	1.00[EUR][1000 genomes]
rs7983965	1.00[EUR][1000 genomes]
rs9576622	0.84[AFR][1000 genomes]
rs9576624	0.87[AFR][1000 genomes]
rs9594296	1.00[EUR][1000 genomes]
rs9603431	1.00[EUR][1000 genomes]
rs9603432	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv3509197	chr13:39379157-39383529	Weak transcription Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
4	esv3509219	chr13:39379198-39383509	Enhancers Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
5	esv3509175	chr13:39379206-39383495	Enhancers Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
6	esv3509208	chr13:39379213-39383570	Enhancers Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
7	esv4433	chr13:39379229-39383505	Weak transcription Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
8	esv3509186	chr13:39379272-39383421	Enhancers ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
9	esv3509230	chr13:39379286-39383419	Enhancers ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
10	nsv819985	chr13:39379522-39386801	Weak transcription Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39376000-39388800	Weak transcription	Gastric	stomach
2	chr13:39379800-39381800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:39380400-39383400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:39380600-39380800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:39380600-39382200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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