Variant report

Variant	rs9576624
Chromosome Location	chr13:39385856-39385857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13378698	0.85[EUR][1000 genomes]
rs34579176	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4400923	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7316966	0.84[EUR][1000 genomes]
rs7328965	0.88[AFR][1000 genomes]
rs7335056	0.88[AFR][1000 genomes]
rs7982164	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7982333	0.90[AFR][1000 genomes]
rs9566365	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9576614	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9576617	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9576619	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9576620	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9576622	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9576623	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9576625	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9576626	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9603434	0.87[AFR][1000 genomes]
rs9603435	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv819985	chr13:39379522-39386801	Weak transcription Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39376000-39388800	Weak transcription	Gastric	stomach
2	chr13:39385400-39387800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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