Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1399312	0.80[EUR][1000 genomes]
rs1588805	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs17234146	0.80[EUR][1000 genomes]
rs17234420	0.81[EUR][1000 genomes]
rs17234636	0.81[EUR][1000 genomes]
rs2175953	0.83[AFR][1000 genomes]
rs34460520	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34660732	0.83[EUR][1000 genomes]
rs4884374	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4886316	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs61471513	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61952972	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61954578	0.80[EUR][1000 genomes]
rs61954612	0.81[EUR][1000 genomes]
rs6562159	0.83[EUR][1000 genomes]
rs6562161	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7318329	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7336814	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7339005	0.80[EUR][1000 genomes]
rs7339191	0.80[EUR][1000 genomes]
rs7358926	0.80[EUR][1000 genomes]
rs7996356	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs882850	0.80[EUR][1000 genomes]
rs908096	0.80[EUR][1000 genomes]
rs9592091	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9592092	0.88[EUR][1000 genomes]
rs981855	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	esv3444432	chr13:61665252-61781081	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61677800-61687000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:61684200-61685200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr13:61684400-61684600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search: