Variant report

Variant	rs61952972
Chromosome Location	chr13:61691487-61691488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs12856036	0.80[EUR][1000 genomes]
rs12858872	0.80[EUR][1000 genomes]
rs1399312	0.82[EUR][1000 genomes]
rs1514552	0.82[EUR][1000 genomes]
rs1588805	0.90[EUR][1000 genomes]
rs17227159	0.82[EUR][1000 genomes]
rs17234146	0.82[EUR][1000 genomes]
rs17234420	0.84[EUR][1000 genomes]
rs17234636	0.84[EUR][1000 genomes]
rs2056053	0.82[EUR][1000 genomes]
rs34460520	0.90[EUR][1000 genomes]
rs34660732	0.85[EUR][1000 genomes]
rs4884374	0.90[EUR][1000 genomes]
rs4886297	0.82[EUR][1000 genomes]
rs4886304	0.80[EUR][1000 genomes]
rs4886316	0.90[EUR][1000 genomes]
rs55966018	0.81[EUR][1000 genomes]
rs61471513	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61954578	0.82[EUR][1000 genomes]
rs61954612	0.83[EUR][1000 genomes]
rs6562159	0.85[EUR][1000 genomes]
rs6562161	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7318329	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7326531	0.82[EUR][1000 genomes]
rs7326655	0.81[EUR][1000 genomes]
rs7327335	0.82[EUR][1000 genomes]
rs7327426	0.82[EUR][1000 genomes]
rs7327590	0.82[EUR][1000 genomes]
rs7327878	0.82[EUR][1000 genomes]
rs7335352	0.81[EUR][1000 genomes]
rs7336814	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7339005	0.82[EUR][1000 genomes]
rs7339191	0.82[EUR][1000 genomes]
rs7358926	0.82[EUR][1000 genomes]
rs7996356	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8002887	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs882850	0.82[EUR][1000 genomes]
rs908096	0.82[EUR][1000 genomes]
rs9317155	0.82[EUR][1000 genomes]
rs9592086	0.82[EUR][1000 genomes]
rs9592088	0.82[EUR][1000 genomes]
rs9592091	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9592092	0.90[EUR][1000 genomes]
rs9598230	0.81[EUR][1000 genomes]
rs9598233	0.81[EUR][1000 genomes]
rs981855	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	esv3444432	chr13:61665252-61781081	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61687000-61694400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links