Variant report

Variant	rs9598233
Chromosome Location	chr13:61662316-61662317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11619095	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12856036	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12858872	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1399312	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1514552	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17227159	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17234146	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17234420	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17234636	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2056053	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34455165	0.85[ASN][1000 genomes]
rs35747877	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4886297	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886300	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886301	0.89[EUR][1000 genomes]
rs4886304	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4886313	0.80[EUR][1000 genomes]
rs55966018	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61471513	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61952972	0.81[EUR][1000 genomes]
rs61954578	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61954579	0.89[EUR][1000 genomes]
rs61954612	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7318329	0.81[EUR][1000 genomes]
rs7326531	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7326655	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327335	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327426	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327590	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327878	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335352	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7336814	0.80[EUR][1000 genomes]
rs7339005	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7339191	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7358926	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996356	0.81[EUR][1000 genomes]
rs882850	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs908096	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9317155	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9592086	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9592088	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9592091	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9598229	0.82[ASN][1000 genomes]
rs9598230	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9805464	0.91[EUR][1000 genomes]
rs981855	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61654600-61663800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:61659800-61668600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr13:61660200-61668600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr13:61660600-61663600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:61660600-61664000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:61661800-61662400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:61661800-61662400	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:61662000-61662400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr13:61662000-61662600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr13:61662000-61662600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr13:61662200-61662800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr13:61662200-61664200	Active TSS	ES-I3 Cell Line	embryonic stem cell

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