Variant report

Variant	rs61954579
Chromosome Location	chr13:61633656-61633657
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11619095	0.86[EUR][1000 genomes]
rs12050068	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12856036	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12858872	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1399312	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1514552	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17227159	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17234146	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17234420	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17234636	0.91[EUR][1000 genomes]
rs2056053	0.90[EUR][1000 genomes]
rs35747877	0.87[EUR][1000 genomes]
rs4886297	0.92[EUR][1000 genomes]
rs4886300	0.80[EUR][1000 genomes]
rs4886301	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4886302	0.87[AFR][1000 genomes]
rs4886304	0.84[EUR][1000 genomes]
rs55966018	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61471513	0.87[EUR][1000 genomes]
rs61954578	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61954612	0.92[EUR][1000 genomes]
rs7326531	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7326655	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7327335	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7327426	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7327590	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7327878	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7335352	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7339005	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7339191	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7358926	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs882850	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs908096	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9317155	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9592086	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9592088	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9592091	0.82[EUR][1000 genomes]
rs9598230	0.90[EUR][1000 genomes]
rs9598232	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9598233	0.89[EUR][1000 genomes]
rs9805464	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs981855	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61622400-61642000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:61633200-61633800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:61633200-61634000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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