Variant report

Variant	rs2056053
Chromosome Location	chr13:61656085-61656086
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11619095	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12856036	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12858872	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1399312	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1514552	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17227159	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17234146	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17234420	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17234636	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34455165	0.85[ASN][1000 genomes]
rs35747877	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4886297	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886300	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886301	0.90[EUR][1000 genomes]
rs4886304	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4886313	0.81[EUR][1000 genomes]
rs55966018	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61471513	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61952972	0.82[EUR][1000 genomes]
rs61954578	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61954579	0.90[EUR][1000 genomes]
rs61954612	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7318329	0.83[EUR][1000 genomes]
rs7326531	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7326655	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327335	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327426	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327590	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327878	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335352	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7336814	0.81[EUR][1000 genomes]
rs7339005	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7339191	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7358926	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996356	0.82[EUR][1000 genomes]
rs882850	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs908096	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9317155	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9592086	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9592088	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9592091	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9598229	0.82[ASN][1000 genomes]
rs9598230	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9598233	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9805464	0.92[EUR][1000 genomes]
rs981855	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61654000-61657000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:61654200-61659200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr13:61654600-61663800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:61655200-61662000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:61655800-61656600	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links