Variant report

Variant	rs9598229
Chromosome Location	chr13:61600601-61600602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11619095	0.82[ASN][1000 genomes]
rs12858872	0.82[ASN][1000 genomes]
rs1399312	0.82[ASN][1000 genomes]
rs1514552	0.82[ASN][1000 genomes]
rs17227159	0.82[ASN][1000 genomes]
rs17234146	0.82[ASN][1000 genomes]
rs17234420	0.82[ASN][1000 genomes]
rs17234636	0.82[ASN][1000 genomes]
rs2056053	0.82[ASN][1000 genomes]
rs35747877	0.84[ASN][1000 genomes]
rs4886297	0.82[ASN][1000 genomes]
rs4886300	0.82[ASN][1000 genomes]
rs55966018	0.82[ASN][1000 genomes]
rs61954612	0.82[ASN][1000 genomes]
rs7326531	0.82[ASN][1000 genomes]
rs7326655	0.82[ASN][1000 genomes]
rs7327335	0.82[ASN][1000 genomes]
rs7327426	0.82[ASN][1000 genomes]
rs7327590	0.82[ASN][1000 genomes]
rs7327878	0.82[ASN][1000 genomes]
rs7335352	0.82[ASN][1000 genomes]
rs7339005	0.82[ASN][1000 genomes]
rs7339191	0.82[ASN][1000 genomes]
rs7358926	0.82[ASN][1000 genomes]
rs882850	0.82[ASN][1000 genomes]
rs908096	0.82[ASN][1000 genomes]
rs9317155	0.82[ASN][1000 genomes]
rs9592086	0.82[ASN][1000 genomes]
rs9592088	0.82[ASN][1000 genomes]
rs9598226	0.88[ASN][1000 genomes]
rs9598230	0.84[ASN][1000 genomes]
rs9598233	0.82[ASN][1000 genomes]
rs981855	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv900242	chr13:61551100-61600601	Enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61584800-61602400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:61598200-61602800	Weak transcription	Brain Anterior Caudate	brain
3	chr13:61598200-61603000	Weak transcription	Brain Substantia Nigra	brain
4	chr13:61598800-61602800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr13:61599000-61602800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr13:61599800-61604200	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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