Variant report

Variant	rs8004400
Chromosome Location	chr14:82085568-82085569
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SEL1L-1	chr14:82085504-82085672	XLOC_011088
2	lnc-SEL1L-1	chr14:82085504-82085611	XLOC_011088

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10135301	1.00[EUR][1000 genomes]
rs10135307	1.00[EUR][1000 genomes]
rs10135757	1.00[EUR][1000 genomes]
rs10138195	1.00[EUR][1000 genomes]
rs10138324	1.00[EUR][1000 genomes]
rs10138348	1.00[EUR][1000 genomes]
rs10140688	1.00[EUR][1000 genomes]
rs10141111	1.00[EUR][1000 genomes]
rs10142799	1.00[EUR][1000 genomes]
rs10146021	1.00[EUR][1000 genomes]
rs10148395	1.00[EUR][1000 genomes]
rs10149002	1.00[EUR][1000 genomes]
rs10149201	1.00[EUR][1000 genomes]
rs10149253	1.00[EUR][1000 genomes]
rs10149472	1.00[EUR][1000 genomes]
rs10151612	1.00[EUR][1000 genomes]
rs12323511	1.00[EUR][1000 genomes]
rs28437440	1.00[EUR][1000 genomes]
rs28620826	1.00[EUR][1000 genomes]
rs28652854	1.00[EUR][1000 genomes]
rs28681025	1.00[EUR][1000 genomes]
rs7144923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs731389	1.00[CEU][hapmap]
rs8003473	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv565299	chr14:81983027-82586324	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1052666	chr14:82069162-83028382	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv902121	chr14:82075469-82146538	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:82080800-82086600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr14:82084800-82088000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links