Variant report

Variant	rs10149002
Chromosome Location	chr14:82135548-82135549
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:82134770..82137572-chr20:47128262..47129981,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10133076	1.00[AMR][1000 genomes]
rs10133261	1.00[AMR][1000 genomes]
rs10135301	1.00[EUR][1000 genomes]
rs10135307	1.00[EUR][1000 genomes]
rs10135757	1.00[EUR][1000 genomes]
rs10138195	1.00[EUR][1000 genomes]
rs10138324	1.00[EUR][1000 genomes]
rs10138348	1.00[EUR][1000 genomes]
rs10140688	1.00[EUR][1000 genomes]
rs10141111	1.00[EUR][1000 genomes]
rs10142799	1.00[EUR][1000 genomes]
rs10145047	1.00[AMR][1000 genomes]
rs10146021	1.00[EUR][1000 genomes]
rs10146941	1.00[AMR][1000 genomes]
rs10147850	1.00[AMR][1000 genomes]
rs10148048	1.00[AMR][1000 genomes]
rs10148395	1.00[EUR][1000 genomes]
rs10149201	1.00[EUR][1000 genomes]
rs10149253	1.00[EUR][1000 genomes]
rs10149472	1.00[EUR][1000 genomes]
rs10151612	1.00[EUR][1000 genomes]
rs12323511	1.00[EUR][1000 genomes]
rs28437440	1.00[EUR][1000 genomes]
rs28495664	1.00[AMR][1000 genomes]
rs28620826	1.00[EUR][1000 genomes]
rs28652854	1.00[EUR][1000 genomes]
rs28681025	1.00[EUR][1000 genomes]
rs56880846	1.00[AMR][1000 genomes]
rs6574672	1.00[AMR][1000 genomes]
rs7144923	1.00[EUR][1000 genomes]
rs7146860	1.00[AMR][1000 genomes]
rs7147833	1.00[AMR][1000 genomes]
rs7151798	1.00[AMR][1000 genomes]
rs7155355	1.00[AMR][1000 genomes]
rs8003473	1.00[EUR][1000 genomes]
rs8004400	1.00[EUR][1000 genomes]
rs8011124	1.00[AMR][1000 genomes]
rs8013365	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv565299	chr14:81983027-82586324	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1052666	chr14:82069162-83028382	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv902121	chr14:82075469-82146538	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1375	chr14:82116362-82138158	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1037114	chr14:82123315-82241676	Bivalent Enhancer Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv528783	chr14:82128836-82146538	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:82135000-82135600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:82135200-82135800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin

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