Variant report
| Variant | rs10146941 |
|---|---|
| Chromosome Location | chr14:82092352-82092353 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:82091384..82092373-chr14:82204011..82204637,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000258977 | TF binding region |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10133076 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10133261 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10145047 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10147850 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10148048 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10149002 | 1.00[AMR][1000 genomes] |
| rs28495664 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56880846 | 1.00[AMR][1000 genomes] |
| rs6574672 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7144154 | 1.00[ASN][1000 genomes] |
| rs7146860 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7147833 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7151798 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7155355 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7160853 | 1.00[ASN][1000 genomes] |
| rs8011124 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8013365 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1047694 | chr14:81831147-82534026 | Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv542145 | chr14:81831147-82534026 | Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv565299 | chr14:81983027-82586324 | Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 4 | nsv1052666 | chr14:82069162-83028382 | Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 5 | nsv902121 | chr14:82075469-82146538 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:82088400-82095600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
