Variant report

Variant	rs8013365
Chromosome Location	chr14:82092022-82092023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr14:82091666-82092123	HCT-116	colon:	n/a	chr14:82091872-82091891 chr14:82091877-82091889
2	RAD21	chr14:82091713-82092075	HCT-116	colon:	n/a	chr14:82091872-82091891 chr14:82091877-82091889
3	CTCF	chr14:82091677-82092128	MCF-7	breast:	n/a	chr14:82091871-82091889 chr14:82091876-82091884 chr14:82091873-82091894 chr14:82091872-82091888
4	CTCF	chr14:82091650-82092073	HepG2	liver:	n/a	chr14:82091871-82091889 chr14:82091876-82091884 chr14:82091873-82091894 chr14:82091872-82091888
5	RAD21	chr14:82091690-82092199	H1-hESC	embryonic stem cell:	n/a	chr14:82091872-82091891 chr14:82091877-82091889
6	RAD21	chr14:82091729-82092091	A549	lung:	n/a	chr14:82091872-82091891 chr14:82091877-82091889
7	RAD21	chr14:82091609-82092146	HepG2	liver:	n/a	chr14:82091872-82091891 chr14:82091877-82091889
8	CTCF	chr14:82091980-82092130	GM12866	blood:	n/a	n/a
9	CTCF	chr14:82091742-82092023	IMR90	lung:	n/a	chr14:82091871-82091889 chr14:82091876-82091884 chr14:82091873-82091894 chr14:82091872-82091888
10	RAD21	chr14:82091658-82092122	ECC-1	luminal epithelium:	n/a	chr14:82091872-82091891 chr14:82091877-82091889
11	CTCF	chr14:82091920-82092070	GM12868	blood:	n/a	n/a
12	SMC3	chr14:82091841-82092044	K562	blood:	n/a	chr14:82091873-82091887
13	SMC3	chr14:82091714-82092114	Hela-S3	cervix:	n/a	chr14:82091873-82091887
14	RAD21	chr14:82091686-82092093	GM12878	blood:	n/a	chr14:82091872-82091891 chr14:82091877-82091889
15	SMC3	chr14:82091746-82092058	HepG2	liver:	n/a	chr14:82091873-82091887
16	CTCF	chr14:82091545-82092272	A549	lung:	n/a	chr14:82091871-82091889 chr14:82091876-82091884 chr14:82091873-82091894 chr14:82091872-82091888
17	RAD21	chr14:82091726-82092069	GM12878	blood:	n/a	chr14:82091872-82091891 chr14:82091877-82091889
18	RAD21	chr14:82091661-82092161	Hela-S3	cervix:	n/a	chr14:82091872-82091891 chr14:82091877-82091889
19	STAT3	chr14:82091670-82092027	MCF10A-Er-Src	breast:	n/a	n/a
20	RAD21	chr14:82091664-82092149	H1-hESC	embryonic stem cell:	n/a	chr14:82091872-82091891 chr14:82091877-82091889
21	RAD21	chr14:82091494-82092265	SK-N-SH	brain:	n/a	chr14:82091872-82091891 chr14:82091877-82091889
22	CTCF	chr14:82091569-82092172	SK-N-SH	brain:	n/a	chr14:82091871-82091889 chr14:82091876-82091884 chr14:82091873-82091894 chr14:82091872-82091888
23	CTCF	chr14:82091699-82092056	K562	blood:	n/a	chr14:82091871-82091889 chr14:82091876-82091884 chr14:82091873-82091894 chr14:82091872-82091888
24	SMC3	chr14:82091731-82092031	GM12878	blood:	n/a	chr14:82091873-82091887
25	RAD21	chr14:82091640-82092203	A549	lung:	n/a	chr14:82091872-82091891 chr14:82091877-82091889
26	RAD21	chr14:82091655-82092148	ECC-1	luminal epithelium:	n/a	chr14:82091872-82091891 chr14:82091877-82091889
27	RAD21	chr14:82091643-82092112	HepG2	liver:	n/a	chr14:82091872-82091891 chr14:82091877-82091889
28	CTCF	chr14:82091429-82092105	GM12878	blood:	n/a	chr14:82091871-82091889 chr14:82091876-82091884 chr14:82091873-82091894 chr14:82091872-82091888
29	CTCF	chr14:82091736-82092024	HCT-116	colon:	n/a	chr14:82091871-82091889 chr14:82091876-82091884 chr14:82091873-82091894 chr14:82091872-82091888
30	RAD21	chr14:82091532-82092267	MCF-7	breast:	n/a	chr14:82091872-82091891 chr14:82091877-82091889
31	CTCF	chr14:82091920-82092070	A549	lung:	n/a	n/a
32	CTCF	chr14:82091920-82092070	HCM	heart:	n/a	n/a
33	CTCF	chr14:82091601-82092147	MCF-7	breast:	n/a	chr14:82091871-82091889 chr14:82091876-82091884 chr14:82091873-82091894 chr14:82091872-82091888
34	RAD21	chr14:82091665-82092129	MCF-7	breast:	n/a	chr14:82091872-82091891 chr14:82091877-82091889
35	RAD21	chr14:82091690-82092151	H1-hESC	embryonic stem cell:	n/a	chr14:82091872-82091891 chr14:82091877-82091889
36	CTCF	chr14:82091880-82092030	HCT-116	colon:	n/a	n/a
37	CTCF	chr14:82091940-82092090	GM12865	blood:	n/a	n/a
38	CTCF	chr14:82091642-82092037	T-47D	breast:	n/a	chr14:82091871-82091889 chr14:82091876-82091884 chr14:82091873-82091894 chr14:82091872-82091888

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:82091438..82092213-chr14:87112845..87113730,2	MCF-7	breast:
2	chr14:82091384..82092373-chr14:82204011..82204637,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258977	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10133076	1.00[AMR][1000 genomes]
rs10133261	1.00[AMR][1000 genomes]
rs10145047	1.00[AMR][1000 genomes]
rs10146941	1.00[AMR][1000 genomes]
rs10147850	1.00[AMR][1000 genomes]
rs10148048	1.00[AMR][1000 genomes]
rs10149002	1.00[AMR][1000 genomes]
rs28495664	1.00[AMR][1000 genomes]
rs56880846	1.00[AMR][1000 genomes]
rs6574672	1.00[AMR][1000 genomes]
rs7146860	1.00[AMR][1000 genomes]
rs7147833	1.00[AMR][1000 genomes]
rs7151798	1.00[AMR][1000 genomes]
rs7155355	1.00[AMR][1000 genomes]
rs8011124	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv565299	chr14:81983027-82586324	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1052666	chr14:82069162-83028382	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv902121	chr14:82075469-82146538	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:82088400-82095600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links