Variant report

Variant	rs10133076
Chromosome Location	chr14:82125033-82125034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10133261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145047	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146941	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10147850	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148048	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149002	1.00[AMR][1000 genomes]
rs28495664	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56880846	1.00[AMR][1000 genomes]
rs6574672	1.00[AMR][1000 genomes]
rs7146860	1.00[AMR][1000 genomes]
rs7147833	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7151798	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7155355	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8011124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8013365	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv565299	chr14:81983027-82586324	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1052666	chr14:82069162-83028382	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv902121	chr14:82075469-82146538	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1375	chr14:82116362-82138158	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1037114	chr14:82123315-82241676	Bivalent Enhancer Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:82123200-82126200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:82123600-82126200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr14:82123600-82128600	Weak transcription	Aorta	Aorta
4	chr14:82123800-82129000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr14:82124400-82126600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:82124600-82125800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr14:82124600-82126000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr14:82124800-82126000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr14:82124800-82126000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr14:82124800-82126200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr14:82124800-82126200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr14:82124800-82126200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:82125000-82125400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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