Variant report

Variant	rs10145047
Chromosome Location	chr14:82107764-82107765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10133076	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10133261	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146941	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10147850	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148048	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149002	1.00[AMR][1000 genomes]
rs28495664	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56880846	1.00[AMR][1000 genomes]
rs6574672	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146860	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147833	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7151798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7155355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8011124	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8013365	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv565299	chr14:81983027-82586324	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1052666	chr14:82069162-83028382	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv902121	chr14:82075469-82146538	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:82106800-82108000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:82106800-82108200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:82107000-82108000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:82107600-82108200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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