Variant report

Variant	rs28495664
Chromosome Location	chr14:82093323-82093324
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10133076	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10133261	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145047	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10147850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149002	1.00[AMR][1000 genomes]
rs56880846	1.00[AMR][1000 genomes]
rs6574672	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146860	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7151798	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7155355	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8011124	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8013365	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv565299	chr14:81983027-82586324	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1052666	chr14:82069162-83028382	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv902121	chr14:82075469-82146538	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:82088400-82095600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:82092800-82093800	Enhancers	Brain Hippocampus Middle	brain
3	chr14:82093000-82093600	Enhancers	Brain Cingulate Gyrus	brain
4	chr14:82093000-82094600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:82093200-82093600	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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