Variant report

Variant	rs8005286
Chromosome Location	chr14:68572485-68572486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68569325..68572968-chr14:68576089..68579365,3	MCF-7	breast:
2	chr14:68569854..68573880-chr14:68602556..68607160,7	MCF-7	breast:
3	chr14:68569098..68575378-chr14:68600721..68608879,10	MCF-7	breast:
4	chr14:68570562..68573394-chr14:68599517..68602198,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs34144798	0.92[AFR][1000 genomes]
rs34777538	0.89[AFR][1000 genomes]
rs57556822	0.92[AFR][1000 genomes]
rs61290854	0.85[AFR][1000 genomes]
rs73286265	0.92[AFR][1000 genomes]
rs73286273	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68569000-68572600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:68569000-68576000	Weak transcription	Adipose Nuclei	Adipose
3	chr14:68569000-68578400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:68569200-68575800	Weak transcription	Primary T cells from cord blood	blood
5	chr14:68569200-68579200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:68569400-68574600	Enhancers	Rectal Smooth Muscle	rectum
7	chr14:68569400-68576200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr14:68569600-68574000	Enhancers	Colon Smooth Muscle	Colon
9	chr14:68570200-68572800	Enhancers	Fetal Heart	heart
10	chr14:68570400-68573800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:68570600-68573400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr14:68570600-68573800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr14:68570600-68573800	Enhancers	NHEK	skin
14	chr14:68570800-68572600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr14:68570800-68573800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr14:68571000-68574000	Enhancers	Fetal Lung	lung
17	chr14:68571200-68573600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr14:68571400-68576200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr14:68571600-68572600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr14:68571600-68572800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr14:68571600-68576000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr14:68571600-68576000	Weak transcription	A549	lung
23	chr14:68571600-68577400	Weak transcription	Fetal Kidney	kidney
24	chr14:68571800-68575200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr14:68571800-68575200	Weak transcription	NHDF-Ad	bronchial
26	chr14:68571800-68575800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr14:68571800-68576000	Weak transcription	Osteobl	bone
28	chr14:68571800-68580200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr14:68572000-68572800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr14:68572000-68573200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr14:68572000-68573200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr14:68572000-68575800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr14:68572000-68576000	Weak transcription	NHLF	lung
34	chr14:68572000-68580200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr14:68572200-68573200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr14:68572200-68575600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr14:68572400-68573000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links