Variant report

Variant	rs80083592
Chromosome Location	chr15:76869223-76869224
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76855877..76857707-chr15:76866696..76869240,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv904400	chr15:76772062-77085283	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1053924	chr15:76803849-77089079	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv471254	chr15:76811390-76978139	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv570021	chr15:76813920-76978139	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
8	nsv570022	chr15:76816015-76978139	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
9	nsv904401	chr15:76816015-77085283	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1042514	chr15:76838221-76906382	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1042089	chr15:76855098-77016127	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1038233	chr15:76855205-76895763	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1037282	chr15:76859309-76895763	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
14	nsv1044453	chr15:76860198-76895763	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1620	chr15:76862152-76914288	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
16	nsv904402	chr15:76863023-76930805	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
17	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
18	nsv1042623	chr15:76863437-76999030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
19	nsv1039269	chr15:76863437-77057021	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
20	nsv1048577	chr15:76868215-76895763	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
21	nsv1051037	chr15:76868215-76902257	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76862600-76872000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr15:76865600-76869400	Weak transcription	Brain Hippocampus Middle	brain
3	chr15:76868000-76869600	ZNF genes & repeats	GM12878-XiMat	blood
4	chr15:76868200-76870000	Weak transcription	Primary B cells from cord blood	blood
5	chr15:76868400-76869800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:76868400-76870800	Enhancers	Esophagus	oesophagus
7	chr15:76868400-76871000	Enhancers	Ovary	ovary
8	chr15:76868600-76870800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr15:76868800-76869400	Enhancers	Primary T cells from cord blood	blood
10	chr15:76868800-76869400	Flanking Active TSS	Fetal Heart	heart
11	chr15:76868800-76869600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:76868800-76869600	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr15:76868800-76869600	Enhancers	Osteobl	bone
14	chr15:76868800-76869800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:76868800-76869800	Enhancers	Adipose Nuclei	Adipose
16	chr15:76868800-76869800	Enhancers	Fetal Intestine Small	intestine
17	chr15:76868800-76869800	Flanking Active TSS	Hela-S3	cervix
18	chr15:76868800-76870000	Enhancers	Liver	Liver
19	chr15:76868800-76870200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr15:76868800-76870200	Enhancers	Small Intestine	intestine
21	chr15:76868800-76870600	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr15:76868800-76870800	Enhancers	Right Atrium	heart
23	chr15:76868800-76871000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:76868800-76871200	Enhancers	NHEK	skin
25	chr15:76869000-76869400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr15:76869000-76869400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:76869000-76869400	Enhancers	Rectal Smooth Muscle	rectum
28	chr15:76869000-76869400	Flanking Active TSS	A549	lung
29	chr15:76869000-76869400	Enhancers	NH-A	brain
30	chr15:76869000-76869600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr15:76869000-76869600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr15:76869000-76869600	Flanking Active TSS	Colonic Mucosa	Colon
33	chr15:76869000-76869600	Enhancers	Placenta	Placenta
34	chr15:76869000-76869600	Enhancers	Gastric	stomach
35	chr15:76869000-76869600	Enhancers	HUVEC	blood vessel
36	chr15:76869000-76869600	Enhancers	NHLF	lung
37	chr15:76869000-76869800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:76869000-76869800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr15:76869000-76869800	Enhancers	Muscle Satellite Cultured Cells	--
40	chr15:76869000-76869800	Enhancers	Pancreas	Pancrea
41	chr15:76869000-76869800	Flanking Active TSS	Stomach Smooth Muscle	stomach
42	chr15:76869000-76869800	Enhancers	NHDF-Ad	bronchial
43	chr15:76869000-76870000	Enhancers	Colon Smooth Muscle	Colon
44	chr15:76869000-76870000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr15:76869000-76870000	Enhancers	Fetal Intestine Large	intestine
46	chr15:76869000-76870000	Enhancers	Psoas Muscle	Psoas
47	chr15:76869000-76870200	Enhancers	Brain Substantia Nigra	brain
48	chr15:76869000-76870200	Enhancers	Fetal Lung	lung
49	chr15:76869000-76870200	Enhancers	Fetal Muscle Leg	muscle
50	chr15:76869000-76870200	Enhancers	Sigmoid Colon	Sigmoid Colon

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