Variant report
Variant | rs8009361 |
---|---|
Chromosome Location | chr14:37725204-37725205 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:8)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:8 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr14:37723534..37725938-chr14:37730959..37732560,2 | K562 | blood: | |
2 | chr14:37723784..37725511-chr14:37726243..37728327,2 | MCF-7 | breast: | |
3 | chr14:37724664..37726988-chr14:38331777..38333562,2 | MCF-7 | breast: | |
4 | chr14:37724973..37727829-chr14:37731230..37733021,2 | MCF-7 | breast: | |
5 | chr14:37708906..37733371-chr14:38048131..38068843,170 | MCF-7 | breast: | |
6 | chr14:37723949..37726058-chr14:37737860..37739770,2 | MCF-7 | breast: | |
7 | chr14:37720431..37722161-chr14:37725187..37727828,2 | MCF-7 | breast: | |
8 | chr14:37709149..37730989-chr14:38048141..38067789,135 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000129514 | Chromatin interaction |
ENSG00000139865 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10132070 | 0.86[ASN][1000 genomes] |
rs10134502 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10135285 | 0.84[ASN][1000 genomes] |
rs10136217 | 0.84[ASN][1000 genomes] |
rs10136464 | 0.84[ASN][1000 genomes] |
rs10137231 | 0.81[ASN][1000 genomes] |
rs10139240 | 0.84[ASN][1000 genomes] |
rs10139938 | 0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs10140175 | 0.84[ASN][1000 genomes] |
rs10140266 | 0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs10141058 | 0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10145536 | 0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10149217 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10150704 | 0.84[ASN][1000 genomes] |
rs10150919 | 0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs10151106 | 0.85[ASN][1000 genomes] |
rs10220291 | 0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs11156943 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1123541 | 0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs12436405 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs12886692 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12888204 | 0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs12891038 | 0.86[ASN][1000 genomes] |
rs12894068 | 0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs12895578 | 0.83[ASN][1000 genomes] |
rs1546975 | 0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs17106535 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs17106539 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1950524 | 0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1950527 | 0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1950883 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1950884 | 0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1950886 | 0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1955938 | 0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs1955939 | 0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1998140 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2093119 | 0.85[ASN][1000 genomes] |
rs2103890 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2145179 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2180632 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2415389 | 0.86[ASN][1000 genomes] |
rs2415391 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28524861 | 0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs28663019 | 0.86[ASN][1000 genomes] |
rs34169316 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs34613310 | 0.84[ASN][1000 genomes] |
rs34844597 | 0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs35276662 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs36134910 | 0.80[EUR][1000 genomes] |
rs3861484 | 0.85[ASN][1000 genomes] |
rs3985275 | 0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4274350 | 0.81[EUR][1000 genomes] |
rs4349060 | 0.81[EUR][1000 genomes] |
rs4576980 | 0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs4605060 | 0.84[ASN][1000 genomes] |
rs4900751 | 0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4900820 | 0.81[EUR][1000 genomes] |
rs61988280 | 0.84[ASN][1000 genomes] |
rs61988312 | 0.82[EUR][1000 genomes] |
rs61988339 | 0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs61988340 | 0.82[EUR][1000 genomes] |
rs61989590 | 0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs714229 | 0.85[ASN][1000 genomes] |
rs714230 | 0.80[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7142673 | 0.84[ASN][1000 genomes] |
rs7143494 | 0.84[ASN][1000 genomes] |
rs7143938 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7148710 | 0.84[ASN][1000 genomes] |
rs7149939 | 0.84[ASN][1000 genomes] |
rs7151497 | 0.85[ASN][1000 genomes] |
rs7161425 | 0.84[ASN][1000 genomes] |
rs72671734 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs743077 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs8004202 | 0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs8004441 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs8007251 | 0.86[ASN][1000 genomes] |
rs8007653 | 0.82[EUR][1000 genomes] |
rs8012018 | 0.86[ASN][1000 genomes] |
rs8015159 | 0.84[ASN][1000 genomes] |
rs8018499 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs8019549 | 0.83[ASN][1000 genomes] |
rs8181946 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs910509 | 0.86[ASN][1000 genomes] |
rs9322977 | 0.84[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv530038 | chr14:37590543-38336191 | Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 58 gene(s) | inside rSNPs | diseases |
2 | nsv915783 | chr14:37607836-38002966 | Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
3 | nsv1036854 | chr14:37609535-38013533 | Active TSS ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
4 | nsv542045 | chr14:37609535-38013533 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
5 | nsv901635 | chr14:37623177-37782273 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
6 | esv3528451 | chr14:37631483-37771365 | Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
7 | esv3527359 | chr14:37631504-37771435 | Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
8 | esv3370191 | chr14:37631508-37771354 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
9 | esv3527360 | chr14:37631521-37771311 | Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
10 | esv3528462 | chr14:37631535-37771345 | Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
11 | esv3528473 | chr14:37631543-37771255 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
12 | esv3527361 | chr14:37631554-37771408 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
13 | esv3528484 | chr14:37631599-37771228 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
14 | esv3527363 | chr14:37631608-37771230 | Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
15 | nsv901636 | chr14:37702799-37736054 | Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
16 | nsv901637 | chr14:37702799-37743583 | Active TSS Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
17 | nsv901638 | chr14:37702799-37814824 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:37694800-37756400 | Weak transcription | Aorta | Aorta |
2 | chr14:37716000-37729400 | Weak transcription | Psoas Muscle | Psoas |
3 | chr14:37716000-37732800 | Weak transcription | Fetal Lung | lung |
4 | chr14:37716000-37770600 | Weak transcription | A549 | lung |
5 | chr14:37717600-37726400 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
6 | chr14:37717800-37738600 | Weak transcription | Fetal Intestine Small | intestine |
7 | chr14:37718000-37737600 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
8 | chr14:37724000-37737400 | Weak transcription | HUVEC | blood vessel |
9 | chr14:37724400-37725400 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
10 | chr14:37724400-37726400 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
11 | chr14:37724400-37726600 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
12 | chr14:37724400-37731200 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
13 | chr14:37724600-37727000 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
14 | chr14:37724600-37731800 | Weak transcription | HepG2 | liver |