Variant report
Variant | rs8181946 |
---|---|
Chromosome Location | chr14:37799832-37799833 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10132039 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10132119 | 0.85[EUR][1000 genomes] |
rs10134502 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10135206 | 0.85[EUR][1000 genomes] |
rs10137741 | 0.81[EUR][1000 genomes] |
rs10139938 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10140266 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10141058 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10141961 | 0.83[AMR][1000 genomes] |
rs10145536 | 0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10146056 | 0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs10149217 | 0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs10149280 | 0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs10150051 | 0.88[EUR][1000 genomes] |
rs10150919 | 0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10151106 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10220291 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs11156943 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs11156952 | 0.86[EUR][1000 genomes] |
rs1123541 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs12435038 | 0.86[EUR][1000 genomes] |
rs12436405 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12886692 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs12888204 | 0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs12894068 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1546975 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs17106535 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs17106539 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs1950517 | 0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs1950524 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1950527 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1950883 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1950884 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1950886 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1955938 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1955939 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1955950 | 0.85[EUR][1000 genomes] |
rs1998140 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2064669 | 0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs2103890 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2145179 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs2180632 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs2415391 | 0.81[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs2415400 | 0.89[EUR][1000 genomes] |
rs28524861 | 0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs2899860 | 0.85[EUR][1000 genomes] |
rs34153734 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs34169316 | 0.85[ASN][1000 genomes] |
rs34844597 | 0.87[ASN][1000 genomes] |
rs35276662 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs36134910 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs3985275 | 0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs4274350 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4349060 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4576980 | 0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4900751 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4900820 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs61988339 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs61989590 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7151222 | 0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs72671734 | 0.80[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs743077 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs8004202 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs8004441 | 0.86[ASN][1000 genomes] |
rs8009361 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs8018499 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs9322980 | 0.86[EUR][1000 genomes] |
rs9743535 | 0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs9796439 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv530038 | chr14:37590543-38336191 | Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 58 gene(s) | inside rSNPs | diseases |
2 | nsv915783 | chr14:37607836-38002966 | Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
3 | nsv1036854 | chr14:37609535-38013533 | Active TSS ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
4 | nsv542045 | chr14:37609535-38013533 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
5 | nsv901638 | chr14:37702799-37814824 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
6 | esv1797813 | chr14:37738197-37846877 | Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
7 | esv1820642 | chr14:37738197-37846877 | Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
8 | esv1822817 | chr14:37738197-37846877 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
9 | esv1851834 | chr14:37738197-37846877 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
10 | nsv901639 | chr14:37743583-38038468 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
11 | esv1813852 | chr14:37768769-37810699 | Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
12 | nsv901640 | chr14:37782273-37963104 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
13 | nsv949227 | chr14:37785560-37963104 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:37759000-37810600 | Weak transcription | Psoas Muscle | Psoas |
2 | chr14:37762600-37812400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
3 | chr14:37769400-37800000 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
4 | chr14:37775200-37817000 | Weak transcription | Aorta | Aorta |
5 | chr14:37796200-37821400 | Weak transcription | Ovary | ovary |
6 | chr14:37797800-37800000 | Enhancers | Liver | Liver |
7 | chr14:37798200-37801000 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
8 | chr14:37798600-37811200 | Weak transcription | HUVEC | blood vessel |
9 | chr14:37799000-37801200 | Weak transcription | Fetal Intestine Large | intestine |
10 | chr14:37799200-37800000 | Weak transcription | A549 | lung |
11 | chr14:37799800-37800400 | ZNF genes & repeats | Breast Myoepithelial Primary Cells | Breast |