Variant report

Variant	rs8012110
Chromosome Location	chr14:79939393-79939394
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12885277	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12891144	0.88[MEX][hapmap]
rs1317720	0.80[MEX][hapmap]
rs1865719	0.85[CHB][hapmap]
rs2003615	0.85[CHB][hapmap];0.87[MEX][hapmap]
rs2007924	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.98[ASN][1000 genomes]
rs2011312	0.85[CHB][hapmap]
rs2370983	0.85[CHB][hapmap]
rs4243664	0.86[ASW][hapmap];0.92[MEX][hapmap];0.85[YRI][hapmap]
rs4903860	0.92[MEX][hapmap]
rs61995162	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6574507	0.85[CHB][hapmap]
rs7141420	0.85[CHB][hapmap]
rs7159565	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79927600-79944800	Weak transcription	Aorta	Aorta
2	chr14:79927800-79944000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr14:79931800-79942400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr14:79933600-79941800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:79933800-79939400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:79933800-79942400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr14:79934000-79939600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:79938600-79940400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr14:79938800-79939400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr14:79938800-79939800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr14:79938800-79940200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr14:79939000-79939400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:79939000-79939600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr14:79939000-79940200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr14:79939000-79940400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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