Variant report

Variant	rs2007924
Chromosome Location	chr14:79942849-79942850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10483921	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12881194	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12885277	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12888258	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12891144	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12894675	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1317720	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs17758297	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs17758369	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17758381	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1865719	0.85[CHB][hapmap]
rs2003615	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2003616	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs2011312	0.86[CHB][hapmap]
rs2043588	0.88[CEU][hapmap]
rs2370983	0.80[CHB][hapmap]
rs34713513	0.88[EUR][1000 genomes]
rs34765073	0.90[EUR][1000 genomes]
rs35086482	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4243664	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4640109	0.81[EUR][1000 genomes]
rs4903859	0.95[CEU][hapmap];0.80[CHB][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4903860	1.00[CEU][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56034924	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56209900	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61295692	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6574507	0.86[CHB][hapmap]
rs7140201	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7141420	0.80[CHB][hapmap]
rs7142987	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs736641	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8012110	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79927600-79944800	Weak transcription	Aorta	Aorta
2	chr14:79927800-79944000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr14:79940200-79950000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr14:79942200-79943800	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr14:79942400-79943800	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr14:79942600-79943200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr14:79942800-79949200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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