Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10483921	0.83[EUR][1000 genomes]
rs12881194	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12891144	0.92[CEU][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs12894675	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs1317720	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1424842	1.00[YRI][hapmap]
rs17109467	1.00[YRI][hapmap]
rs17758297	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17758369	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.80[TSI][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17758381	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1895671	1.00[YRI][hapmap]
rs2003615	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs2003616	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2007924	0.88[CEU][hapmap]
rs34713513	0.88[ASN][1000 genomes]
rs34765073	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35086482	0.82[EUR][1000 genomes]
rs4243664	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs4903859	0.90[CEU][hapmap];0.80[EUR][1000 genomes]
rs4903860	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs56209900	0.82[EUR][1000 genomes]
rs7140201	0.84[EUR][1000 genomes]
rs7142987	0.87[CEU][hapmap]
rs736641	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530072	chr14:79769657-79928269	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2043588	ANGEL1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79881200-79896000	Weak transcription	Aorta	Aorta
2	chr14:79884200-79901800	Weak transcription	Stomach Smooth Muscle	stomach

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