Variant report

Variant	rs56209900
Chromosome Location	chr14:79917377-79917378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10130216	0.90[ASN][1000 genomes]
rs10483921	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12881194	0.82[EUR][1000 genomes]
rs12888258	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12891144	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12894675	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1317720	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17758297	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17758369	0.82[EUR][1000 genomes]
rs17758381	0.82[EUR][1000 genomes]
rs2003615	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2003616	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2007924	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2043588	0.82[EUR][1000 genomes]
rs34713513	0.82[EUR][1000 genomes]
rs34765073	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35086482	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243664	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4640109	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4903859	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4903860	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56034924	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61295692	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61995162	0.96[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7140201	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7142987	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs736641	0.91[EUR][1000 genomes]
rs8004710	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530072	chr14:79769657-79928269	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79906600-79927000	Weak transcription	Aorta	Aorta
2	chr14:79915400-79917600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr14:79915800-79917600	Weak transcription	Fetal Lung	lung

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