Variant report

Variant	rs8012678
Chromosome Location	chr14:79230525-79230526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10144083	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs10145149	0.82[CHB][hapmap]
rs17108215	0.85[CEU][hapmap];0.81[GIH][hapmap];0.83[TSI][hapmap];0.95[EUR][1000 genomes]
rs17108218	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17108221	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7141042	0.82[CHB][hapmap]
rs7141475	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs71414767	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7142344	0.86[CHB][hapmap]
rs7149051	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs987644	0.82[CHB][hapmap]
rs9972280	0.82[CHB][hapmap];0.83[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8012678	ZDHHC22	cis	parietal	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79229600-79230600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:79229800-79231000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr14:79230000-79231200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr14:79230000-79231400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:79230000-79231400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:79230000-79232400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr14:79230000-79232600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr14:79230000-79232600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr14:79230000-79233600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr14:79230200-79230800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:79230200-79231000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:79230200-79231000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:79230200-79231200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr14:79230200-79231400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr14:79230200-79231400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr14:79230200-79231600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr14:79230200-79233000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr14:79230400-79231000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr14:79230400-79231200	Flanking Active TSS	NH-A	brain
20	chr14:79230400-79231600	Enhancers	HUES48 Cell Line	embryonic stem cell

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