Variant report

Variant	rs8017394
Chromosome Location	chr14:39911715-39911716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11844337	0.82[YRI][hapmap]
rs17109203	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57243783	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59857298	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147617	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7148660	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7149131	0.82[YRI][hapmap]
rs73287557	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287570	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9322999	0.86[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv832774	chr14:39897746-40060823	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39903000-39912600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr14:39903000-39916400	Weak transcription	Fetal Heart	heart
3	chr14:39903200-39912000	Weak transcription	Aorta	Aorta
4	chr14:39910000-39911800	ZNF genes & repeats	Lung	lung
5	chr14:39910800-39912400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:39911200-39911800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:39911200-39911800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr14:39911200-39912000	Enhancers	HSMM	muscle
9	chr14:39911200-39912200	Enhancers	NHLF	lung
10	chr14:39911400-39911800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:39911400-39911800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr14:39911400-39911800	Enhancers	Adipose Nuclei	Adipose
13	chr14:39911600-39911800	ZNF genes & repeats	Brain Hippocampus Middle	brain
14	chr14:39911600-39912000	Active TSS	Muscle Satellite Cultured Cells	--
15	chr14:39911600-39912000	Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr14:39911600-39918000	Weak transcription	Gastric	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links