Variant report

Variant	rs7149131
Chromosome Location	chr14:39940652-39940653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10130959	1.00[JPT][hapmap]
rs10143290	1.00[JPT][hapmap]
rs10146207	0.83[AMR][1000 genomes]
rs10148762	1.00[JPT][hapmap]
rs10483539	1.00[JPT][hapmap]
rs11157065	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11844333	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11844337	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11844410	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11845552	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11849739	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11850682	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12434446	1.00[JPT][hapmap]
rs12587760	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12589259	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12590681	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109203	0.82[ASW][hapmap];0.82[YRI][hapmap]
rs17623137	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17623398	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17696146	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17696446	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17696497	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1955725	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2025029	1.00[JPT][hapmap]
rs2092723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2094275	1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs2148506	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2182522	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2415548	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4899219	1.00[JPT][hapmap]
rs4899237	1.00[JPT][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes]
rs57001152	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6571914	1.00[JPT][hapmap]
rs6571916	1.00[JPT][hapmap]
rs6571917	1.00[JPT][hapmap]
rs6571934	1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs6571935	0.85[AMR][1000 genomes]
rs6571936	0.85[AMR][1000 genomes]
rs7151017	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72677604	0.83[AMR][1000 genomes]
rs72677610	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72677622	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72677624	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72677630	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72677635	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72677640	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72677641	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72677644	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72677648	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8005849	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8006198	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8010635	1.00[JPT][hapmap]
rs8010826	1.00[JPT][hapmap]
rs9322999	0.81[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv832774	chr14:39897746-40060823	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7149131	FBXO33	cis	lymphoblastoid	seeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39938600-39943000	Weak transcription	Left Ventricle	heart
2	chr14:39938800-39943400	Weak transcription	GM12878-XiMat	blood
3	chr14:39938800-39943400	Weak transcription	HepG2	liver
4	chr14:39939000-39942000	Weak transcription	Brain Angular Gyrus	brain
5	chr14:39939000-39942200	Weak transcription	Brain Anterior Caudate	brain
6	chr14:39939000-39943000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:39939000-39946000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:39939000-39954600	Weak transcription	Brain Hippocampus Middle	brain
9	chr14:39939800-39941800	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr14:39940000-39941600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr14:39940000-39941800	Enhancers	Primary neutrophils fromperipheralblood	blood

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