Variant report

Variant	rs7151017
Chromosome Location	chr14:39870143-39870144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10130584	0.84[AMR][1000 genomes]
rs10130959	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10143290	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10146207	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10148762	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10483539	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11157065	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11844333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11844337	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11844410	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11845552	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11849739	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11850682	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12434446	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12587760	0.82[CEU][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12589259	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12590681	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17623137	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17623398	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17696146	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17696446	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17696497	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1955716	1.00[ASW][hapmap]
rs1955725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2025029	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2092723	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2094275	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2148506	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2182522	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2415548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4899219	1.00[JPT][hapmap]
rs4899237	1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57001152	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6571914	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6571916	1.00[JPT][hapmap]
rs6571917	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6571934	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6571935	0.95[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6571936	0.95[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7140561	1.00[CHB][hapmap]
rs7149131	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7158384	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72677604	0.92[AMR][1000 genomes]
rs72677610	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72677622	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72677624	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72677630	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72677635	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72677640	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72677641	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72677644	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72677648	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8005849	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8006198	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8010635	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8010826	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39770800-39872400	Weak transcription	Colonic Mucosa	Colon
2	chr14:39835400-39872400	Weak transcription	Fetal Muscle Leg	muscle
3	chr14:39836200-39872800	Weak transcription	Esophagus	oesophagus
4	chr14:39836400-39870600	Weak transcription	Gastric	stomach
5	chr14:39840000-39882600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:39846200-39878800	Weak transcription	Right Ventricle	heart
7	chr14:39846800-39872400	Weak transcription	HSMMtube	muscle
8	chr14:39850400-39870800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:39853600-39874200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr14:39854400-39872600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr14:39857000-39870400	Weak transcription	Brain Germinal Matrix	brain
12	chr14:39860200-39882200	Weak transcription	Fetal Heart	heart
13	chr14:39861200-39871800	Weak transcription	Fetal Brain Male	brain
14	chr14:39861200-39872200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr14:39861400-39874000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:39861800-39872000	Weak transcription	K562	blood
17	chr14:39862000-39886000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr14:39862400-39870800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr14:39862400-39871000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr14:39862400-39871200	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr14:39862400-39871400	Strong transcription	Liver	Liver
22	chr14:39862400-39874800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr14:39862600-39871000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr14:39862600-39871200	Strong transcription	Adipose Nuclei	Adipose
25	chr14:39862800-39871200	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr14:39862800-39871200	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr14:39863200-39870800	Weak transcription	Brain Substantia Nigra	brain
28	chr14:39863200-39873000	Weak transcription	Lung	lung
29	chr14:39863400-39870400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr14:39863400-39871200	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr14:39863400-39872000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr14:39863400-39874000	Weak transcription	Fetal Lung	lung
33	chr14:39863400-39891600	Weak transcription	Small Intestine	intestine
34	chr14:39863600-39871200	Strong transcription	Primary T cells from cord blood	blood
35	chr14:39863800-39872600	Weak transcription	Spleen	Spleen
36	chr14:39864000-39870400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr14:39864000-39871000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr14:39864600-39898800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr14:39865000-39872600	Weak transcription	NHLF	lung
40	chr14:39865000-39891200	Weak transcription	Psoas Muscle	Psoas
41	chr14:39865000-39898200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr14:39865200-39870400	Weak transcription	HMEC	breast
43	chr14:39865200-39872000	Weak transcription	NH-A	brain
44	chr14:39865200-39872200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr14:39865200-39872200	Weak transcription	HUVEC	blood vessel
46	chr14:39865200-39872600	Weak transcription	NHEK	skin
47	chr14:39865200-39878800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr14:39865400-39870600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr14:39865800-39871200	Strong transcription	Primary B cells from cord blood	blood
50	chr14:39865800-39871200	Strong transcription	Primary T helper cells fromperipheralblood	blood

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