Variant report

Variant	rs8010826
Chromosome Location	chr14:39843314-39843315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39834152..39839984-chr14:39840314..39846059,5	MCF-7	breast:
2	chr14:39643516..39645871-chr14:39842730..39845557,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100941	Chromatin interaction
ENSG00000271424	Chromatin interaction
ENSG00000259083	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10130584	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10130959	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10142118	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10143290	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs10146207	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10148678	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10148762	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs10150863	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1040811	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10483539	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs10872919	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11157065	0.82[AMR][1000 genomes]
rs11844333	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs11844337	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11844410	0.84[AMR][1000 genomes]
rs11849739	0.82[AMR][1000 genomes]
rs11850682	0.84[AMR][1000 genomes]
rs12434446	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs12589259	0.84[AMR][1000 genomes]
rs17623137	0.84[AMR][1000 genomes]
rs17623398	0.84[AMR][1000 genomes]
rs17696146	0.84[AMR][1000 genomes]
rs17696446	0.84[AMR][1000 genomes]
rs17696497	0.84[AMR][1000 genomes]
rs1955725	0.84[AMR][1000 genomes]
rs2025029	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2094275	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2099409	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2117338	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2148506	0.84[AMR][1000 genomes]
rs2182522	0.84[AMR][1000 genomes]
rs2274398	0.85[EUR][1000 genomes]
rs2415548	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs3783292	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs4899219	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4899237	1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4902500	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs6571914	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs6571916	0.82[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs6571917	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6571918	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6571934	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6571935	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6571936	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7140561	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7149131	1.00[JPT][hapmap]
rs7151017	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7156249	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7158384	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7158633	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7159584	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72677610	0.84[AMR][1000 genomes]
rs72677622	0.84[AMR][1000 genomes]
rs72677624	0.84[AMR][1000 genomes]
rs72677630	0.84[AMR][1000 genomes]
rs72677635	0.84[AMR][1000 genomes]
rs72677640	0.84[AMR][1000 genomes]
rs72677641	0.84[AMR][1000 genomes]
rs72677644	0.84[AMR][1000 genomes]
rs72677648	0.84[AMR][1000 genomes]
rs8005849	0.84[AMR][1000 genomes]
rs8006198	0.84[AMR][1000 genomes]
rs8010635	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8012235	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8019161	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs8021494	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39757400-39843800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:39770800-39872400	Weak transcription	Colonic Mucosa	Colon
3	chr14:39803000-39845800	Weak transcription	NHEK	skin
4	chr14:39803200-39843400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr14:39803200-39845800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr14:39803400-39843800	Weak transcription	HMEC	breast
7	chr14:39812200-39845800	Weak transcription	Stomach Mucosa	stomach
8	chr14:39816800-39850200	Weak transcription	Fetal Kidney	kidney
9	chr14:39817400-39843800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:39818800-39845200	Weak transcription	Placenta	Placenta
11	chr14:39818800-39867200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr14:39834000-39851600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr14:39834600-39846000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr14:39834600-39851600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr14:39834800-39846000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr14:39835000-39851600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr14:39835200-39851600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr14:39835400-39851400	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr14:39835400-39872400	Weak transcription	Fetal Muscle Leg	muscle
20	chr14:39836000-39845600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr14:39836200-39872800	Weak transcription	Esophagus	oesophagus
22	chr14:39836400-39870600	Weak transcription	Gastric	stomach
23	chr14:39836600-39843400	Weak transcription	NH-A	brain
24	chr14:39836600-39845800	Weak transcription	Right Atrium	heart
25	chr14:39836600-39852600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr14:39836800-39845800	Weak transcription	Brain Anterior Caudate	brain
27	chr14:39836800-39845800	Weak transcription	Right Ventricle	heart
28	chr14:39837000-39852600	Weak transcription	Primary T cells from cord blood	blood
29	chr14:39837600-39845800	Weak transcription	Brain Angular Gyrus	brain
30	chr14:39837600-39845800	Weak transcription	Colon Smooth Muscle	Colon
31	chr14:39837600-39845800	Weak transcription	Fetal Heart	heart
32	chr14:39837600-39845800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr14:39837600-39846000	Weak transcription	Brain Hippocampus Middle	brain
34	chr14:39837600-39846000	Weak transcription	HSMMtube	muscle
35	chr14:39837800-39845800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr14:39837800-39851600	Weak transcription	Dnd41	blood
37	chr14:39838400-39845600	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr14:39838600-39845800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr14:39838600-39850800	Weak transcription	Fetal Thymus	thymus
40	chr14:39838800-39845600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr14:39838800-39845800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr14:39839000-39845800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr14:39839800-39850000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr14:39840000-39844000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr14:39840000-39845800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr14:39840000-39845800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr14:39840000-39845800	Weak transcription	Adipose Nuclei	Adipose
48	chr14:39840000-39846000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr14:39840000-39846000	Weak transcription	Ovary	ovary
50	chr14:39840000-39846200	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links