Variant report

Variant	rs8017403
Chromosome Location	chr14:79903406-79903407
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11625620	0.96[CEU][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11625769	0.96[CEU][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11848998	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17109199	1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs17109211	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17109214	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17109218	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17109224	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17109231	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17109236	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17109240	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17109242	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4899745	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61519036	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7144418	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs7148714	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7154797	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8022379	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530072	chr14:79769657-79928269	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79901800-79904800	Enhancers	Stomach Smooth Muscle	stomach
2	chr14:79902400-79903600	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr14:79902800-79904600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr14:79902800-79906800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr14:79903000-79904200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr14:79903000-79904200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr14:79903000-79904600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr14:79903200-79903600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:79903200-79904800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr14:79903200-79905600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr14:79903200-79906800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr14:79903200-79908600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr14:79903400-79908200	Weak transcription	Colon Smooth Muscle	Colon
14	chr14:79903400-79908600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr14:79903400-79910200	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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