Variant report
| Variant | rs11625769 |
|---|---|
| Chromosome Location | chr14:79901465-79901466 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10136360 | 0.85[AFR][1000 genomes] |
| rs10146690 | 0.86[YRI][hapmap] |
| rs10150482 | 0.95[YRI][hapmap];0.92[AFR][1000 genomes] |
| rs10444685 | 1.00[ASN][1000 genomes] |
| rs11625620 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12147236 | 1.00[ASN][1000 genomes] |
| rs12147614 | 1.00[ASN][1000 genomes] |
| rs17109221 | 0.95[YRI][hapmap] |
| rs17109256 | 0.90[YRI][hapmap] |
| rs17836166 | 1.00[ASN][1000 genomes] |
| rs2009367 | 1.00[ASN][1000 genomes] |
| rs2370982 | 0.84[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs4899745 | 1.00[CEU][hapmap];0.95[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs61519036 | 0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61993116 | 1.00[ASN][1000 genomes] |
| rs61993137 | 1.00[ASN][1000 genomes] |
| rs61993138 | 1.00[ASN][1000 genomes] |
| rs61993139 | 1.00[ASN][1000 genomes] |
| rs61993140 | 1.00[ASN][1000 genomes] |
| rs61993141 | 1.00[ASN][1000 genomes] |
| rs61993159 | 1.00[ASN][1000 genomes] |
| rs61995163 | 1.00[ASN][1000 genomes] |
| rs61995166 | 1.00[ASN][1000 genomes] |
| rs61995177 | 1.00[ASN][1000 genomes] |
| rs61995185 | 1.00[ASN][1000 genomes] |
| rs7144011 | 1.00[YRI][hapmap] |
| rs7154797 | 1.00[CEU][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs8005235 | 1.00[ASN][1000 genomes] |
| rs8017403 | 0.96[CEU][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931412 | chr14:79420297-79928269 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv902110 | chr14:79624492-79998294 | Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv530072 | chr14:79769657-79928269 | Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1045241 | chr14:79885361-80734201 | Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:79884200-79901800 | Weak transcription | Stomach Smooth Muscle | stomach |
| 2 | chr14:79901400-79901600 | Enhancers | Colon Smooth Muscle | Colon |
