Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10444685	1.00[ASN][1000 genomes]
rs11625620	1.00[ASN][1000 genomes]
rs11625769	1.00[ASN][1000 genomes]
rs12147614	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12589828	1.00[ASW][hapmap]
rs17836166	1.00[ASN][1000 genomes]
rs2009367	1.00[ASN][1000 genomes]
rs61519036	1.00[ASN][1000 genomes]
rs61993116	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61993137	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61993138	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61993139	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61993140	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61993141	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61993159	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61995163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61995166	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61995177	1.00[ASN][1000 genomes]
rs61995185	1.00[ASN][1000 genomes]
rs7144418	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8005235	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79927600-79944800	Weak transcription	Aorta	Aorta
2	chr14:79927800-79944000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr14:79931800-79942400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr14:79932200-79939000	Weak transcription	Brain Germinal Matrix	brain
5	chr14:79933600-79941800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:79933800-79939000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:79933800-79939400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:79933800-79942400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr14:79934000-79938800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr14:79934000-79938800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr14:79934000-79939600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr14:79934200-79938800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr14:79934200-79939000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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